Index _ | A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U _ __hash__() (lymph.diagnose_times.Distribution method) (lymph.modalities.Modality method) __init__() (lymph.diagnose_times.Composite method) (lymph.diagnose_times.Distribution method) (lymph.graph.AbstractNode method) (lymph.graph.Edge method) (lymph.graph.LymphNodeLevel method) (lymph.graph.Representation method) (lymph.graph.Tumor method) (lymph.modalities.Composite method) (lymph.modalities.Modality method) (lymph.models.Bilateral method) (lymph.models.Midline method) (lymph.models.Unilateral method) A AbstractNode (class in lymph.graph) add_or_mult() (in module lymph.utils) allowed_states (lymph.graph.Representation property) B Bilateral (class in lymph.models) binary() (lymph.graph.LymphNodeLevel class method) (lymph.models.Bilateral class method) (lymph.models.Unilateral class method) C central (lymph.models.Midline property) check_confusion_matrix() (lymph.modalities.Modality method) check_spsn() (in module lymph.utils) check_unique_names() (in module lymph.utils) child (lymph.graph.Edge property) clear_distributions() (lymph.diagnose_times.Composite method) clear_modalities() (lymph.modalities.Composite method) Clinical (class in lymph.modalities) clinical() (in module lymph.utils) comp_bayes_net_prob() (lymph.graph.LymphNodeLevel method) comp_obs_prob() (lymph.graph.AbstractNode method) comp_trans_prob() (lymph.graph.LymphNodeLevel method) comp_transition_tensor() (in module lymph.utils) Composite (class in lymph.diagnose_times) (class in lymph.modalities) compute_confusion_matrix() (lymph.modalities.Clinical method) (lymph.modalities.Modality method) (lymph.modalities.Pathological method) compute_encoding() (in module lymph.matrix) (lymph.models.Unilateral method) confusion_matrix (lymph.modalities.Modality property) contra_state_dist_evo() (lymph.models.Midline method) D data_matrix() (lymph.models.Unilateral method) DataWarning del_distribution() (lymph.diagnose_times.Composite method) del_modality() (lymph.modalities.Composite method) diagnose_matrix() (lymph.models.Unilateral method) diagnose_prob() (lymph.models.Unilateral method) DiagnoseType (in module lymph.types) dict_to_func() (in module lymph.utils) Distribution (class in lymph.diagnose_times) distributions_hash() (lymph.diagnose_times.Composite method) draw_diag_times() (lymph.diagnose_times.Distribution method) draw_diagnoses() (in module lymph.utils) (lymph.models.Unilateral method) draw_patients() (lymph.models.Bilateral method) (lymph.models.Midline method) (lymph.models.Unilateral method) E early_late_mapping() (in module lymph.utils) Edge (class in lymph.graph) edges (lymph.graph.Representation property) evolve() (lymph.models.Unilateral method) evolve_midext() (in module lymph.matrix) extract_kwargs() (lymph.diagnose_times.Distribution static method) F fast_trace() (in module lymph.matrix) flatten() (in module lymph.utils) G generate_data_encoding() (in module lymph.matrix) generate_observation() (in module lymph.matrix) generate_transition() (in module lymph.matrix) get_all_distributions() (lymph.diagnose_times.Composite method) get_all_modalities() (lymph.modalities.Composite method) get_distribution() (lymph.diagnose_times.Composite method) get_distribution_params() (lymph.diagnose_times.Composite method) get_lnl_spread_params() (lymph.models.Bilateral method) (lymph.models.Midline method) (lymph.models.Unilateral method) get_mermaid() (lymph.graph.Representation method) get_mermaid_url() (lymph.graph.Representation method) get_micro_mod() (lymph.graph.Edge method) get_modality() (lymph.modalities.Composite method) get_name() (lymph.graph.Edge method) get_num_dims() (lymph.types.Model method) get_params() (lymph.diagnose_times.Distribution method) (lymph.graph.Edge method) (lymph.graph.Representation method) (lymph.models.Bilateral method) (lymph.models.Midline method) (lymph.models.Unilateral method) (lymph.types.Model method) get_params_from() (in module lymph.utils) get_spread_params() (lymph.models.Bilateral method) (lymph.models.Midline method) (lymph.models.Unilateral method) get_spread_prob() (lymph.graph.Edge method) get_state() (lymph.graph.Representation method) get_state_idx_matrix() (in module lymph.utils) get_t_stages() (lymph.models.Unilateral method) get_tumor_spread_params() (lymph.models.Bilateral method) (lymph.models.Midline method) (lymph.models.Unilateral method) GraphDictType (in module lymph.types) growth_edges (lymph.graph.Representation property) H HasGetParams (class in lymph.types) HasSetParams (class in lymph.types) I is_binary (lymph.graph.LymphNodeLevel property) (lymph.graph.Representation property) (lymph.models.Bilateral property) (lymph.models.Unilateral property) is_growth (lymph.graph.Edge property) is_trinary (lymph.graph.LymphNodeLevel property) (lymph.graph.Representation property) (lymph.modalities.Composite property) (lymph.models.Bilateral property) (lymph.models.Midline property) (lymph.models.Unilateral property) is_tumor_spread (lymph.graph.Edge property) is_updateable (lymph.diagnose_times.Distribution property) L likelihood() (lymph.models.Bilateral method) (lymph.models.Midline method) (lymph.models.Unilateral method) (lymph.types.Model method) lnl_edges (lymph.graph.Representation property) lnls (lymph.graph.Representation property) load_patient_data() (lymph.models.Bilateral method) (lymph.models.Midline method) (lymph.models.Unilateral method) (lymph.types.Model method) lymph.diagnose_times module lymph.graph module lymph.matrix module lymph.modalities module lymph.models module lymph.types module lymph.utils module LymphNodeLevel (class in lymph.graph) M marginalize_unknown (lymph.models.Midline property) max_time (lymph.diagnose_times.Composite property) (lymph.diagnose_times.Distribution property) micro_mod (lymph.graph.Edge property) midext_evo() (lymph.models.Midline method) midext_prob (lymph.models.Midline property) Midline (class in lymph.models) mixing_param (lymph.models.Midline property) modalities_hash() (lymph.modalities.Composite method) Modality (class in lymph.modalities) Model (class in lymph.types) module lymph.diagnose_times lymph.graph lymph.matrix lymph.modalities lymph.models lymph.types lymph.utils N name (lymph.graph.AbstractNode property) nodes (lymph.graph.Representation property) normalize() (lymph.diagnose_times.Distribution static method) O obs_dist() (lymph.models.Bilateral method) (lymph.models.Unilateral method) obs_list (lymph.models.Unilateral property) observation_matrix() (lymph.models.Unilateral method) P ParamsType (in module lymph.types) parent (lymph.graph.Edge property) Pathological (class in lymph.modalities) pathological() (in module lymph.utils) patient_data (lymph.models.Unilateral property) patient_likelihoods() (lymph.models.Bilateral method) PatternType (in module lymph.types) pmf (lymph.diagnose_times.Distribution property) popfirst() (in module lymph.utils) posterior_joint_state_dist() (lymph.models.Bilateral method) posterior_state_dist() (lymph.models.Unilateral method) R replace_all_distributions() (lymph.diagnose_times.Composite method) replace_all_modalities() (lymph.modalities.Composite method) Representation (class in lymph.graph) risk() (lymph.models.Bilateral method) (lymph.models.Midline method) (lymph.models.Unilateral method) (lymph.types.Model method) row_wise_kron() (in module lymph.utils) S sens (lymph.modalities.Modality property) set_distribution() (lymph.diagnose_times.Composite method) set_distribution_params() (lymph.diagnose_times.Composite method) set_lnl_spread_params() (lymph.models.Bilateral method) (lymph.models.Midline method) (lymph.models.Unilateral method) set_micro_mod() (lymph.graph.Edge method) set_modality() (lymph.modalities.Composite method) set_params() (lymph.diagnose_times.Distribution method) (lymph.graph.Edge method) (lymph.graph.Representation method) (lymph.models.Bilateral method) (lymph.models.Midline method) (lymph.models.Unilateral method) (lymph.types.Model method) set_params_for() (in module lymph.utils) set_spread_params() (lymph.models.Bilateral method) (lymph.models.Midline method) (lymph.models.Unilateral method) set_spread_prob() (lymph.graph.Edge method) set_state() (lymph.graph.Representation method) set_tumor_spread_params() (lymph.models.Bilateral method) (lymph.models.Midline method) (lymph.models.Unilateral method) smart_updating_dict_cached_property (class in lymph.utils) spec (lymph.modalities.Modality property) spread_prob (lymph.graph.Edge property) state (lymph.graph.AbstractNode property) state_dist() (lymph.models.Bilateral method) (lymph.models.Unilateral method) state_dist_evo() (lymph.models.Unilateral method) state_list (lymph.graph.Representation property) SupportError synchronize_params() (in module lymph.utils) T t_stages (lymph.diagnose_times.Composite property) tile_and_repeat() (in module lymph.utils) to_dict() (lymph.graph.Representation method) transition_matrix() (lymph.models.Unilateral method) transition_prob() (lymph.models.Unilateral method) transition_tensor (lymph.graph.Edge property) trigger() (in module lymph.utils) trinary() (lymph.graph.LymphNodeLevel class method) (lymph.models.Bilateral class method) (lymph.models.Midline class method) (lymph.models.Unilateral class method) Tumor (class in lymph.graph) tumor_edges (lymph.graph.Representation property) tumors (lymph.graph.Representation property) U unflatten_and_split() (in module lymph.utils) Unilateral (class in lymph.models) unknown (lymph.models.Midline property) use_central (lymph.models.Midline property) use_mixing (lymph.models.Midline property)